| MirGeneDB ID | Lch-Mir-2184 |
|---|---|
| Family name | MIR-2184 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Ami-Mir-2184 Cmi-Mir-2184-v1 Cpi-Mir-2184 Dre-Mir-2184-P1a Dre-Mir-2184-P1b Gga-Mir-2184 Gmo-Mir-2184 Loc-Mir-2184 Mal-Mir-2184-P1 Mal-Mir-2184-P2 Mun-Mir-2184 Tni-Mir-2184-P1 Xla-Mir-2184-P3 Xla-Mir-2184-P4 Xtr-Mir-2184 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (LatCha1_add) |
JH128089.1: 395160-395219 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-2184) |
Mir-132-P2
JH128089.1: 379330-379397 [+]
Ensembl
Mir-132-P1 JH128089.1: 385834-385892 [+] Ensembl Mir-2184 JH128089.1: 395160-395219 [-] Ensembl |
| Seed | ACAGUAA |
| Precursor (pre-Mir +30nt flank) |
UAUGAUUGUUGCCAACAUCCUGGUUCUCAGAACAGUAAGAGUUUAUGUGCUGUGAGUGUCUUCAACCAGCACAUCAACUUUUACAGUUCAGGGCGGCGGGAAGAGCACCUCCCACAGUGGGet precursor sequence |
| Structure | 10 20 30 40 50 UAUGAUUGUUGCCAACA-- --| CA A U UGAGUG UCCUG GUUCU GAAC GUAAGAGUU AUGUGCUG U AGGGC CGGGA CUUG CAUUUUCAA UACACGAC C GGUGACACCCUCCACGAGA GG^ -- A C CAACUU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-2184_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAGUAAGAGUUUAUGUGCUGU -23
Get sequence
|
| Star sequence | Lch-Mir-2184_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- AGCACAUCAACUUUUACAGUUCA -60
Get sequence
|
