MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-275-P5

Family name MIR-275 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-275-P3  Lpo-Mir-275-P4-v1  Lpo-Mir-275-P6  Lpo-Mir-275-P7 
Orthologues Aae-Mir-275  Aga-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dlo-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Gpa-Mir-275  Hme-Mir-275  Isc-Mir-275  Tca-Mir-275 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Arthropoda
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013668203.1: 148369-148431 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-275-P5)		 Mir-305-P5 NW_013668203.1: 136936-136994 [-] Ensembl
Mir-275-P5 NW_013668203.1: 148369-148431 [-] Ensembl
Seed CAGGUAC
Precursor
(pre-Mir +30nt flank)		 
GAACAUCAUUUUUUGCCCUUCGUGAUUCGCACGUGCUGCAUCAGGUGCUUGUGACUGUGCCUUUUGAAGUCAGGUACCUGAAGUAGCGCGCGGAGAGUCCCGGGUAAUUUCUUCGUAGCGAAU
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Structure
        10         20        30         40        50        60  
GAACAUCAUUUUUUGCCC-    U     GCA-|       A         UG     GUGCC 
                   UUCG GAUUC    CGUGCUGC UCAGGUGCU  UGACU     \
                   GGGC CUGAG    GCGCGAUG AGUCCAUGG  ACUGA     U
UAAGCGAUGCUUCUUUAAU    C     AGGC^       A         --     AGUUU 
 120       110       100        90        80          70
Deep sequencing
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CommentThere is a second Drosha cut +3 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-275-P5_5p*
mirBase accessionNone
Sequence 
0- ACGUGCUGCAUCAGGUGCUUGUGACU -26
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Mature sequence

Lpo-Mir-275-P5_3p
mirBase accessionNone
Sequence 
39- UCAGGUACCUGAAGUAGCGCGCGG -63
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