MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-275-P6

Family name MIR-275 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-275-P3  Lpo-Mir-275-P4-v1  Lpo-Mir-275-P5  Lpo-Mir-275-P7 
Orthologues Aae-Mir-275  Aga-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dlo-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Gpa-Mir-275  Hme-Mir-275  Isc-Mir-275  Tca-Mir-275 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Arthropoda
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013665698.1: 806533-806595 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-275-P6)		 Mir-275-P6 NW_013665698.1: 806533-806595 [+] Ensembl
Mir-305-P6 NW_013665698.1: 827497-827555 [+] Ensembl
Seed CAGGUAC
Precursor
(pre-Mir +30nt flank)		 
AAGAAGCUACUAUCAUCCGGUGUGGUUCCCACGUGCUGCAUCAGGUGCUUGUGACUGUGUUGAAGAAAGUCAGGUACCUGAAGUAGCGCGCGGAGAACUCUGGGAUUUAGCGACGAGACAAAG
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Structure
        10            20         30        40        50        60 
AAGAAGCUACUAUCAUC----|  UGU     -  A        A           UGACUGUGU 
                     CGG   GGUUC CC CGUGCUGC UCAGGUGCUUG         \
                     GUC   UCAAG GG GCGCGAUG AGUCCAUGGAC         U
GAAACAGAGCAGCGAUUUAGG^  ---     A  C        A           UGAAAGAAG 
 120       110       100           90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-275-P6_5p*
mirBase accessionNone
Sequence 
0- ACGUGCUGCAUCAGGUGCUUGUGA -24
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Mature sequence

Lpo-Mir-275-P6_3p
mirBase accessionNone
Sequence 
39- UCAGGUACCUGAAGUAGCGCGCGG -63
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